Publications

Publications

 

Rodriguez-Martinez JA, Reinke AW, Bhimsaria D, Keating AE, Ansari AZ (2017) Combinatorial bZIP dimers display complex DNA-binding specificity landscapes. Elife 6:e19272.

Eguchi A, et al. (2016) Reprogramming cell fate with a genome-scale library of artificial transcription factors. Proc Natl Acad Sci 113(51):E8257–E8266.

Erwin GS, et al. (2016) Synthetic genome readers target clustered binding sites across diverse chromatin states. Proc Natl Acad Sci 113(47):E7418–E7427.

Erwin GS, et al. (2016) Genome-wide Mapping of Drug-DNA Interactions in Cells with COSMIC (Crosslinking of Small Molecules to Isolate Chromatin). J Vis Exp (107):e53510.

Meyer P, et al. (2014) Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. BMC Syst Biol 8(1):13.

Erwin GS, Bhimsaria D, Eguchi A, Ansari AZ (2014) Mapping Polyamide-DNA Interactions in Human Cells Reveals a New Design Strategy for Effective Targeting of Genomic Sites. Angew Chem Int Ed Engl 53(38):1–6.

Campbell ZT, et al. (2012) Cooperativity in RNA-Protein Interactions: Global Analysis of RNA Binding Specificity. Cell Rep 1(5):570–581.

Tietjen JR, Donato LJ, Bhimsaria D, Ansari AZ (2011) Sequence-specificity and energy landscapes of DNA-binding molecules. Methods Enzymol 497:3–30.

Carlson CD, et al. (2010) Specificity landscapes of DNA binding molecules elucidate biological function. Proc Natl Acad Sci U S A 107(10):4544–9.